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Communication et Publications

Communications et Publications

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Research Gate

Papiers,  Conférences & Posters

2018

Chaix, E.,  Deléger, L., Bossy, R., Nédellec, C. (2018).
Text-mining tools for extracting information about microbial biodiversity in food
Food Microbiology https://doi.org/10.1016/j.fm.2018.04.011

Chaix, E., Bossy, R., Nédellec, C. (2018).
Reconstruction and visualisation of gene regulatory networks from different provenances : application at Arabidopsis thaliana .
Presented at BLAH4, Tokyo, JPN (2018-01-10 – 2018-01-13).
https://prodinra.inra.fr/record/420130

Nédellec, C., Chaix, E., Bossy, R., Deléger, L., Derozier, S., BOHUON, J.-B., Loux, V. (2018).
L’ontologie OntoBiotope pour l’étude de la biodiversité microbienne.
Presented at EGC’2018: 18èmes Conférence Internationale sur l’Extraction et la Gestion des Connaissances, Paris, FRA (2018-01-22 – 2018-01-26).
https://prodinra.inra.fr/record/420131

Chaix, E. ; Derozier, S. ; Deléger, L. ; Falentin, H. ; Bohuon, J.-B. ; Ba, M. ; Bossy, R. ; Sicard, D. ; Loux, V. ; Nédellec, C. (2018).
FLORILEGE: an integrative database using text mining and ontologies
JOBIM 2018 (2018-07-03-2018-07-06) Marseille (FRA).
https://prodinra.inra.fr/?locale=fr#!ConsultNotice:433983

2017

Chaix, E., Aubin, S., Deléger, L., Nédellec, C. (2017).
Text-mining needs of the food microbiology research community.
Full paper presented at 2017 EFITA WCCA Congress, Montpellier, FRA (2017-07-02 – 2017-07-06).
https://prodinra.inra.fr/record/405408

Chaix, E. , Deleger, L., Bossy, R., Nédellec, C. (2017).
Text mining tools for extracting information about microbial biodiversity in food.
In: Microbial Spoilers in food (p. 34), Presented at Microbial Spoilers in Food 2017, Quimper, FRA (2017-06-28 – 2017-06-30).
https://prodinra.inra.fr/record/397819

Nédellec, C., Bossy, R., Chaix, E., Deléger, L. (2017).
Text-mining and ontologies: new approaches to knowledge discovery of microbial diversity.
In: Proceedings of the 4th International Microbial Diversity Conference (p. 221-227).
Short-paper presented at 4th International Conference on Microbial Diversity 2017, Bari, ITA (2017-10-24 – 2017-10-26). ITA : Marco Gobetti.

https://prodinra.inra.fr/record/414573

Falentin, H., Chaix, E., Derozier, S., Weber, M., Buchin, S., Dridi, B., Deutsch, S.-M., Valence-Bertel, F., Casaregola, S., Renault, P., Champomier-Verges, M.-C., Thierry, A., Zagorec, M., Irlinger, F., Delbes, C., Aubin, S., Bessieres, P., Loux, V., Bossy, R., Dibie, J., Sicard, D., Nédellec, C. (2017).
Florilege : a database gathering microbial phenotypes of food interest.
Presented at 4. International Conference on Microbial Diversity 2017, Bari, ITA (2017-10-24 – 2017-10-26).
https://prodinra.inra.fr/record/414637

Bohuon J.-B., Ba, M., Chaix, E., Bossy, R., Nédellec, C. (2017).
Integration of Alvis within the OpenMinTeD platform as Galaxy utilities.
Presented at Galaxy Community Conference,Montpellier, FRA (2017-06-26 – 2017-06-30). 
DOI : 10.5281/zenodo.200370

2016

Chaix, E., Dubreucq, B., Fatihi, A., Valsamou, D., Bossy, R., Ba, M., Deléger, L., Zweigenbaum, P., Bessières, P., Lepiniec, L. & Nédellec, C. (2016).
Overview of the regulatory network of plant seed development (seedev) task at the BIONLP shared task 2016.
In Association for Computational Linguistics, Proceedings of the 4th BioNLP Shared Task Workshop , pages 1–11,
Berlin, Germany, August 13, 2016

Delėger, L., Bossy, R., Chaix, E., Ba, M., Ferrė, A., Bessières, P., & Nėdellec, C. (2016).
Overview of the Bacteria Biotope Task at BioNLP Shared Task 2016.
In Association for Computational Linguistics, Proceedings of the 4th BioNLP Shared Task Workshop , pages 1–11,
Berlin, Germany, August 13, 2016

Guillard, V., Buche, P., Dibie, J., Dervaux, S., Acerbi, F., Chaix, E., Gontard, N., & Guillaume, C. (2016).
CO 2 and O 2 solubility and diffusivity data in food products stored in data warehouse structured by ontology.
Data in brief, 7, 1556-1559.
DOI: 10.1016/j.dib.2016.04.044

Guillard, V., Couvert, O., Stahl, V., Hanin, A., Denis, C., Huchet, V., Chaix, E., Loriot, C., Vincellot, T. & Thuault, D. (2016).
Validation of a predictive model coupling gas transfer and microbial growth in fresh food packed under modified atmosphere.
Food microbiology, 58, 43-55.
DOI: 10.1016/j.fm.2016.03.011

2015

Chaix, E., Guillaume, C., Gontard, N., Guillard, V. (2015)
Diffusivity and solubility of CO2 in dense solid food products. Journal of Food Engineering
DOI: 10.1016/j.jfoodeng.2015.05.023

Chaix, E., Dubreucq, B., Valsamou, D., Fatihi, A., Bossy, R., Bessieres, P., Deleger, L., Zweigenbaum, P.,  Lepiniec, L., Nédellec, C. (2015).
Information Extraction Challenge Gene Regulation Network in Arabidopsis thaliana (GRNA)
Presented at Orsay, France, Conference: Paris-Saclay Center for Data Science: Open Software Initiative (OSI) day (October 2015)
DOI: 10.13140/RG.2.1.4286.6326

Chaix, E., Broyart, B., Couvert, O., Guillaume, C., Gontard, N., & Guillard, V. (2015).
Mechanistic model coupling gas exchange dynamics and Listeria monocytogenes growth in modified atmosphere packaging of non respiring food.
Food microbiology, 51, 192-205.
DOI:10.1016/j.fm.2015.05.017

Chaix, E., Guillaume, C., Gontard, N., & Guillard, V. (2015).
Performance of a non-invasive methodology for assessing oxygen diffusion in liquid and solid food products.
Journal of Food Engineering, 171, 87-94.
DOI: 10.1016/j.jfoodeng.2015.10.014

Chaix, E., Couvert, O., Guillaume, C., Gontard, N. & Guillard, V. (2015). 
Predictive Microbiology Coupled With Gas (O2/CO2) Transfer In Food/Packaging Systems: How to Develop an Efficient Decision Support Tool For Food Packaging Dimensioning.  
Comprehensive Reviews in Food Science and Food Safety 14 (1), 1-21.
DOI : 10.1111/1541-4337.12117

Chaix, E., Dubreucq, B., Valsamou, D., Fatihi, A., Bossy, R., Deleger, L., Zweigenbaum, P., Bessieres, P., Lepiniec, L., Nédellec, C. (2015).
Knowledge model of regulatory networks involved in Arabidopsis seed development for information extraction and integration from text.
Presented at BioCreative 5, Sevilla, ESP (2015-09-09 – 2015-09-11).
http://prodinra.inra.fr/record/344677

Thuault, D., Chaix, E., Touhami, R., Huchet, V., Buche, P., Dibie, J., Lecluse, M., Coulon, F., Loriot, C., Vincelot, T., Stahl, V., Denis, C., Hanin, A., Couvert, O., Dervaux, S., Guillard, V. (2015).
Conception du conditionnement d’aliments sous atmosphère modifiée.
Industries Alimentaires et Agricoles, Dossier Emballage (sept-oct), 18-24.
http://prodinra.inra.fr/record/332595

Dubreucq, B., Valsamou, D., Fatihi, A., Chaix, E., Bossy, R., Bessieres, P., Deleger, L., Zweigenbaum, P., Nédellec, C., Lepiniec, L. (2015).
Information extraction from articles for the elaboration of the regulatory networks involved in Arabidopsis seed development.
Presented at 26th International Conference on Arabidopsis Research, Paris, DOI: 10.13140/RG.2.1.4851.8803

2014

Chaix, E., Guillaume, C., & Guillard, V. (2014).
Oxygen and carbon dioxide solubility and diffusivity in solid food matrices: a review of past and current knowledge.
Comprehensive Reviews in Food Science and Food Safety, 13(3), 261-286.
DOI: 10.1111/1541-4337.12058

2013

Bertrand, B., Guillard, V., Chaix, E., & Couvert, O. (2013).
CO2 kinetics in cheese matrix at 20°C position from interface (mm) A new methodology to monitor CO 2 transfer and determine its diffusivity and solubility in solid food
Conference: 8th International Conference on Predictive Modelling in Food, At Paris, September 2013

2012

Chaix, E., Broyart, B., Guillaume, C., Couvert, O., & Guillard, V. (2012).
A decision support tool to predict mass transfer and microorganism growth in modified atmosphere packaging of fresh food products
Poster presentation : 2012 EFFoST Annual Meeting, Montpellier, France, November 2012

Chaix, E. & Guillard, V. (2012).
CO2 kinetics in cheese matrix at 20°C position from interface (mm) A new methodology to monitor CO 2 transfer and determine its diffusivity and solubility in solid food
Poster presentation : 2012 EFFoST Annual Meeting, Montpellier, France, November 2012

Chaix, E. & Guillard, V. (2012).
Evaluation of O2 transfer in the food/packaging system for a better shelf life evaluation of modified atmosphere food packaging.
Poster presentation : 2012 EFFoST Annual Meeting, Montpellier, France, November 2012

 

Autres produits de la recherche

 

Chaix, E. ; Dubreucq, B. ; Valsamou, D. ; Fatihi, A. ; DELEGER, L. ; Bossy, R. ; Zweigenbaum, P. ; Bessieres, P. ; Lepiniec, L. ; Nédellec, C. (2016)

Annotation Guidelines BIONLP-ST 2016 SeeDev task

Chaix, E.  (2015 , 2016).
Les gaz et l’aliment :

  • Les éléments déterminants de l’efficacité des gaz vis-à-vis des microorganismes.
  • Présentation du modèle combinant Transferts de Gaz et Microbiologie Prévisionnelle

Evènement professionne, « Efficacité des atmosphères modifiées sur la qualité microbiologique des aliments » (2015-09-30-2015-09-30) Saint Pierre de Quiberon (FRA); (2016-02-02-2016-02-02) Rennes (FRA).